diff --git a/kernel/gen_kheaders.sh b/kernel/gen_kheaders.sh
index dc5744b93f8c..e13ca842eb7e 100755
--- a/kernel/gen_kheaders.sh
+++ b/kernel/gen_kheaders.sh
@@ -32,8 +32,15 @@ fi
 all_dirs="$all_dirs $dir_list"
 
 # include/generated/compile.h is ignored because it is touched even when none
-# of the source files changed. This causes pointless regeneration, so let us
-# ignore them for md5 calculation.
+# of the source files changed.
+#
+# When Kconfig regenerates include/generated/autoconf.h, its timestamp is
+# updated, but the contents might be still the same. When any CONFIG option is
+# changed, Kconfig touches the corresponding timestamp file include/config/*.h.
+# Hence, the md5sum detects the configuration change anyway. We do not need to
+# check include/generated/autoconf.h explicitly.
+#
+# Ignore them for md5 calculation to avoid pointless regeneration.
 headers_md5="$(find $all_dirs -name "*.h"			|
 		grep -v "include/generated/compile.h"	|
 		grep -v "include/generated/autoconf.h"	|